Index of /~adkern/ag1kg/shicScanPhaseI

	Name	Last modified	Size	Description
	Parent Directory		-
	AOM_partial_stats.txt	2019-10-11 13:13	233M
	anoShic.txt	2019-10-11 13:13	548
	autosome_vecs.log	2019-10-11 13:13	338K
	bfsTestStats/	2019-10-11 13:13	-
	calcPValsForAllGeneSets.sh	2019-10-11 13:13	555
	calcQValsForAllTermBeds.sh	2019-10-11 13:13	801
	classifyAllAutosomesForEachPop.py	2019-10-11 13:13	1.0K
	classifyAllAutosomesForEachPop5State.py	2019-10-11 13:13	1.2K
	concatenateAllFVsForAutosomes.sh	2019-10-11 13:13	1.0K
	core	2019-10-11 13:13	361M
	countIntersectForAllGeneSets.sh	2019-10-11 13:16	822
	countIntersectForAllTermBeds.sh	2019-10-11 13:16	1.0K
	doPcaOnTestData.py	2019-10-11 13:13	3.4K
	doPermutationCountsOfAllGeneSets.py	2019-10-11 13:13	2.0K
	doPermutationCountsOfTermAnnotElements.py	2019-10-11 13:13	2.6K
	dump.txt	2019-10-11 13:13	3.0K
	dump2.txt	2019-10-11 13:13	11K
	dump3.txt	2019-10-11 13:13	1.7K
	geneLists/	2019-10-11 13:16	-
	generateSimLaunchScripts.sh	2019-10-11 13:13	549
	generateSimLaunchScriptsFinish.sh	2019-10-11 13:13	570
	generateSimLaunchScriptsFullJobsNoWaiting.sh	2019-10-11 13:13	559
	generateSimLaunchScriptsFullJobsNoWaitingFinish.sh	2019-10-11 13:13	571
	generateSimLaunchScripts_tauSensitivityTest.sh	2019-10-11 13:13	504
	getAllPartialStatsAndDafs.sh	2019-10-11 13:13	919
	getExonsOverlappingEachBedElement.py	2019-10-11 13:16	2.5K
	getExonsOverlappingEachBedElementAllPerms.py	2019-10-11 13:16	2.8K
	getGenes.txt	2019-10-11 13:13	489
	getGenesInRealAndPermutedCallsNoCluster.sh	2019-10-11 13:13	1.4K
	getPermutationPValsOfGeneSets.py	2019-10-11 13:13	1.2K
	getPermutationQValsOfTermAnnotElements.py	2019-10-11 13:13	3.4K
	hardSims.txt	2019-10-11 13:13	2.2K
	launchAllSims.sh	2019-10-11 13:13	157
	launchAllSimsFinish.sh	2019-10-11 13:13	177
	launchAllSims_tauSensitivityTest.sh	2019-10-11 13:13	162
	launch_AOM_partials.sh	2019-10-11 13:16	23K
	makeAllFVsForAutosomesSegmentedOnCluster.sh	2019-10-11 13:13	2.8K
	makeAllFVsForSimulatedData.sh	2019-10-11 13:13	1.9K
	makeAllFVsForSimulatedData_tauSensitivityTest.sh	2019-10-11 13:13	1.6K
	makeTrainingSets9StateTest.py	2019-10-11 13:13	4.1K
	neutSims.txt	2019-10-11 13:13	2.1K
	nohup.out	2019-10-11 13:16	0
	partialStatsAndDafs/	2019-10-11 13:13	-
	permuteAllPopsShicCalls.sh	2019-10-11 13:13	446
	permuteOrderOfSweepCallRunsByChr.py	2019-10-11 13:13	5.5K
	popList.txt	2019-10-11 13:13	36
	run_rSquared2Chroms.py	2019-10-11 13:13	427
	runjob.txt	2019-10-11 13:13	854
	seedms	2019-10-11 13:13	18
	simBFSSmallScaleTest.py	2019-10-11 13:13	2.8K
	simLaunchScripts/	2019-10-11 13:13	-
	simLaunchScriptsFinish/	2019-10-11 13:16	-
	simLaunchScriptsFullJobsNoWaiting/	2019-10-11 13:13	-
	simLaunchScriptsFullJobsNoWaitingFinish/	2019-10-11 13:13	-
	simLaunchScripts_tauSensitivityTest/	2019-10-11 13:13	-
	simLogs/	2019-10-11 13:13	-
	simulated_vecs.log	2019-10-11 13:13	38K
	softSims.txt	2019-10-11 13:13	2.2K
	stats_to_use.txt	2019-10-11 13:13	127
	test.log	2019-10-11 13:13	102K
	test.stats	2019-10-11 13:13	61K
	testAllClassifiersAndBuildHeatmaps.sh	2019-10-11 13:13	432
	testAllClassifiersAndBuildHeatmaps5STate.sh	2019-10-11 13:13	411
	testClassifierAcrossTauRanges.py	2019-10-11 13:13	2.8K
	testClassifierAndBuildHeatmap9State.py	2019-10-11 13:13	5.7K
	testDir/	2019-10-11 13:16	-
	testFileSystem.sh	2019-10-11 13:13	971
	testdir/	2019-10-11 13:13	-
	tmpPartialStatsAndDafs/	2019-10-11 13:13	-
	todo.txt	2019-10-11 13:13	70
	trainAllClassifiers5State.sh	2019-10-11 13:13	1.5K
	trainAllClassifiers9State.sh	2019-10-11 13:13	1.2K
	trainAllClassifiers9StateTest.sh	2019-10-11 13:13	1.2K
	trainShic.txt	2019-10-11 13:13	597
	wcout.txt	2019-10-11 13:13	5