Index of /~adkern/ag1kg/shicScanPhaseI
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Last modified
Size
Description
Parent Directory
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wcout.txt
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trainShic.txt
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trainAllClassifiers9StateTest.sh
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trainAllClassifiers9State.sh
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trainAllClassifiers5State.sh
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todo.txt
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tmpPartialStatsAndDafs/
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testdir/
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testFileSystem.sh
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testDir/
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testClassifierAndBuildHeatmap9State.py
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testClassifierAcrossTauRanges.py
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testAllClassifiersAndBuildHeatmaps5STate.sh
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testAllClassifiersAndBuildHeatmaps.sh
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test.stats
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test.log
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stats_to_use.txt
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softSims.txt
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simulated_vecs.log
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simLogs/
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simLaunchScripts_tauSensitivityTest/
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simLaunchScriptsFullJobsNoWaitingFinish/
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simLaunchScriptsFullJobsNoWaiting/
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simLaunchScriptsFinish/
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simLaunchScripts/
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simBFSSmallScaleTest.py
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seedms
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runjob.txt
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run_rSquared2Chroms.py
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popList.txt
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permuteOrderOfSweepCallRunsByChr.py
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permuteAllPopsShicCalls.sh
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partialStatsAndDafs/
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nohup.out
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neutSims.txt
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makeTrainingSets9StateTest.py
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makeAllFVsForSimulatedData_tauSensitivityTest.sh
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makeAllFVsForSimulatedData.sh
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makeAllFVsForAutosomesSegmentedOnCluster.sh
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launch_AOM_partials.sh
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launchAllSims_tauSensitivityTest.sh
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launchAllSimsFinish.sh
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launchAllSims.sh
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hardSims.txt
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getPermutationQValsOfTermAnnotElements.py
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getPermutationPValsOfGeneSets.py
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getGenesInRealAndPermutedCallsNoCluster.sh
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getGenes.txt
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getExonsOverlappingEachBedElementAllPerms.py
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getExonsOverlappingEachBedElement.py
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getAllPartialStatsAndDafs.sh
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generateSimLaunchScripts_tauSensitivityTest.sh
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generateSimLaunchScriptsFullJobsNoWaitingFinish.sh
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generateSimLaunchScriptsFullJobsNoWaiting.sh
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generateSimLaunchScriptsFinish.sh
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generateSimLaunchScripts.sh
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geneLists/
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dump3.txt
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dump2.txt
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dump.txt
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doPermutationCountsOfTermAnnotElements.py
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doPermutationCountsOfAllGeneSets.py
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doPcaOnTestData.py
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countIntersectForAllTermBeds.sh
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countIntersectForAllGeneSets.sh
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core
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concatenateAllFVsForAutosomes.sh
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classifyAllAutosomesForEachPop5State.py
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classifyAllAutosomesForEachPop.py
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calcQValsForAllTermBeds.sh
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calcPValsForAllGeneSets.sh
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bfsTestStats/
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autosome_vecs.log
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anoShic.txt
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AOM_partial_stats.txt
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