Index of /~adkern/ag1kg/shicScanPhaseI
Name
Last modified
Size
Description
Parent Directory
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simBFSSmallScaleTest.py
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2.8K
anoShic.txt
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548
dump.txt
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3.0K
generateSimLaunchScripts.sh
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549
seedms
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18
partialStatsAndDafs/
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simLaunchScripts_tauSensitivityTest/
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getGenesInRealAndPermutedCallsNoCluster.sh
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1.4K
stats_to_use.txt
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127
classifyAllAutosomesForEachPop5State.py
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1.2K
core
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361M
simLogs/
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calcQValsForAllTermBeds.sh
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801
trainAllClassifiers5State.sh
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1.5K
simulated_vecs.log
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38K
testAllClassifiersAndBuildHeatmaps.sh
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432
calcPValsForAllGeneSets.sh
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555
testAllClassifiersAndBuildHeatmaps5STate.sh
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411
classifyAllAutosomesForEachPop.py
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1.0K
test.log
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102K
test.stats
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61K
runjob.txt
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854
permuteOrderOfSweepCallRunsByChr.py
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5.5K
softSims.txt
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2.2K
simLaunchScripts/
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tmpPartialStatsAndDafs/
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makeTrainingSets9StateTest.py
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4.1K
autosome_vecs.log
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338K
generateSimLaunchScripts_tauSensitivityTest.sh
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504
simLaunchScriptsFullJobsNoWaiting/
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testClassifierAcrossTauRanges.py
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2.8K
generateSimLaunchScriptsFullJobsNoWaiting.sh
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559
trainShic.txt
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597
popList.txt
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36
doPcaOnTestData.py
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3.4K
makeAllFVsForAutosomesSegmentedOnCluster.sh
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2.8K
generateSimLaunchScriptsFinish.sh
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570
getGenes.txt
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489
launchAllSims_tauSensitivityTest.sh
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162
wcout.txt
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simLaunchScriptsFullJobsNoWaitingFinish/
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hardSims.txt
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2.2K
testFileSystem.sh
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971
makeAllFVsForSimulatedData_tauSensitivityTest.sh
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1.6K
permuteAllPopsShicCalls.sh
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446
todo.txt
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70
doPermutationCountsOfTermAnnotElements.py
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2.6K
makeAllFVsForSimulatedData.sh
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1.9K
neutSims.txt
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2.1K
getAllPartialStatsAndDafs.sh
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919
trainAllClassifiers9StateTest.sh
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1.2K
dump3.txt
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1.7K
bfsTestStats/
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dump2.txt
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11K
testClassifierAndBuildHeatmap9State.py
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5.7K
getPermutationPValsOfGeneSets.py
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1.2K
launchAllSimsFinish.sh
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177
launchAllSims.sh
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157
AOM_partial_stats.txt
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233M
generateSimLaunchScriptsFullJobsNoWaitingFinish.sh
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571
run_rSquared2Chroms.py
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427
concatenateAllFVsForAutosomes.sh
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1.0K
doPermutationCountsOfAllGeneSets.py
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2.0K
getPermutationQValsOfTermAnnotElements.py
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3.4K
trainAllClassifiers9State.sh
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1.2K
testdir/
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testDir/
2019-10-11 13:16
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simLaunchScriptsFinish/
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countIntersectForAllGeneSets.sh
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822
getExonsOverlappingEachBedElementAllPerms.py
2019-10-11 13:16
2.8K
geneLists/
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nohup.out
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0
countIntersectForAllTermBeds.sh
2019-10-11 13:16
1.0K
getExonsOverlappingEachBedElement.py
2019-10-11 13:16
2.5K
launch_AOM_partials.sh
2019-10-11 13:16
23K
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