Index of /~adkern/ag1kg/shicScanPhaseI
Name
Last modified
Size
Description
Parent Directory
-
AOM_partial_stats.txt
2019-10-11 13:13
233M
anoShic.txt
2019-10-11 13:13
548
autosome_vecs.log
2019-10-11 13:13
338K
bfsTestStats/
2019-10-11 13:13
-
calcPValsForAllGeneSets.sh
2019-10-11 13:13
555
calcQValsForAllTermBeds.sh
2019-10-11 13:13
801
classifyAllAutosomesForEachPop.py
2019-10-11 13:13
1.0K
classifyAllAutosomesForEachPop5State.py
2019-10-11 13:13
1.2K
concatenateAllFVsForAutosomes.sh
2019-10-11 13:13
1.0K
core
2019-10-11 13:13
361M
countIntersectForAllGeneSets.sh
2019-10-11 13:16
822
countIntersectForAllTermBeds.sh
2019-10-11 13:16
1.0K
doPcaOnTestData.py
2019-10-11 13:13
3.4K
doPermutationCountsOfAllGeneSets.py
2019-10-11 13:13
2.0K
doPermutationCountsOfTermAnnotElements.py
2019-10-11 13:13
2.6K
dump.txt
2019-10-11 13:13
3.0K
dump2.txt
2019-10-11 13:13
11K
dump3.txt
2019-10-11 13:13
1.7K
geneLists/
2019-10-11 13:16
-
generateSimLaunchScripts.sh
2019-10-11 13:13
549
generateSimLaunchScriptsFinish.sh
2019-10-11 13:13
570
generateSimLaunchScriptsFullJobsNoWaiting.sh
2019-10-11 13:13
559
generateSimLaunchScriptsFullJobsNoWaitingFinish.sh
2019-10-11 13:13
571
generateSimLaunchScripts_tauSensitivityTest.sh
2019-10-11 13:13
504
getAllPartialStatsAndDafs.sh
2019-10-11 13:13
919
getExonsOverlappingEachBedElement.py
2019-10-11 13:16
2.5K
getExonsOverlappingEachBedElementAllPerms.py
2019-10-11 13:16
2.8K
getGenes.txt
2019-10-11 13:13
489
getGenesInRealAndPermutedCallsNoCluster.sh
2019-10-11 13:13
1.4K
getPermutationPValsOfGeneSets.py
2019-10-11 13:13
1.2K
getPermutationQValsOfTermAnnotElements.py
2019-10-11 13:13
3.4K
hardSims.txt
2019-10-11 13:13
2.2K
launchAllSims.sh
2019-10-11 13:13
157
launchAllSimsFinish.sh
2019-10-11 13:13
177
launchAllSims_tauSensitivityTest.sh
2019-10-11 13:13
162
launch_AOM_partials.sh
2019-10-11 13:16
23K
makeAllFVsForAutosomesSegmentedOnCluster.sh
2019-10-11 13:13
2.8K
makeAllFVsForSimulatedData.sh
2019-10-11 13:13
1.9K
makeAllFVsForSimulatedData_tauSensitivityTest.sh
2019-10-11 13:13
1.6K
makeTrainingSets9StateTest.py
2019-10-11 13:13
4.1K
neutSims.txt
2019-10-11 13:13
2.1K
nohup.out
2019-10-11 13:16
0
partialStatsAndDafs/
2019-10-11 13:13
-
permuteAllPopsShicCalls.sh
2019-10-11 13:13
446
permuteOrderOfSweepCallRunsByChr.py
2019-10-11 13:13
5.5K
popList.txt
2019-10-11 13:13
36
run_rSquared2Chroms.py
2019-10-11 13:13
427
runjob.txt
2019-10-11 13:13
854
seedms
2019-10-11 13:13
18
simBFSSmallScaleTest.py
2019-10-11 13:13
2.8K
simLaunchScripts/
2019-10-11 13:13
-
simLaunchScriptsFinish/
2019-10-11 13:16
-
simLaunchScriptsFullJobsNoWaiting/
2019-10-11 13:13
-
simLaunchScriptsFullJobsNoWaitingFinish/
2019-10-11 13:13
-
simLaunchScripts_tauSensitivityTest/
2019-10-11 13:13
-
simLogs/
2019-10-11 13:13
-
simulated_vecs.log
2019-10-11 13:13
38K
softSims.txt
2019-10-11 13:13
2.2K
stats_to_use.txt
2019-10-11 13:13
127
test.log
2019-10-11 13:13
102K
test.stats
2019-10-11 13:13
61K
testAllClassifiersAndBuildHeatmaps.sh
2019-10-11 13:13
432
testAllClassifiersAndBuildHeatmaps5STate.sh
2019-10-11 13:13
411
testClassifierAcrossTauRanges.py
2019-10-11 13:13
2.8K
testClassifierAndBuildHeatmap9State.py
2019-10-11 13:13
5.7K
testDir/
2019-10-11 13:16
-
testFileSystem.sh
2019-10-11 13:13
971
testdir/
2019-10-11 13:13
-
tmpPartialStatsAndDafs/
2019-10-11 13:13
-
todo.txt
2019-10-11 13:13
70
trainAllClassifiers5State.sh
2019-10-11 13:13
1.5K
trainAllClassifiers9State.sh
2019-10-11 13:13
1.2K
trainAllClassifiers9StateTest.sh
2019-10-11 13:13
1.2K
trainShic.txt
2019-10-11 13:13
597
wcout.txt
2019-10-11 13:13
5
Apache/2.4.52 (Ubuntu) Server at sesame.uoregon.edu Port 80