#!/bin/bash
#$ -S /bin/bash
#$ -N runjob
#$ -o /dev/null -j y
#$ -q HPblg7,HP8g7,galaxy
cd /san/personal/dan/ag1kg/shicScanPhaseI

/home/schrider/anaconda/bin/python /san/personal/dan/shicRedux/makeFeatureVecsForChrArm.py /san/data/ag1kg/haplotypes/ag1000g.phase1.ar3.haplotypes.3R.h5 /san/personal/dan/ag1kg/shicScanPhaseI/partialStatsAndDafs//UGS_partial_stats.txt 0.00221425544515 3R 53200684 UGS 55000 11 /san/data/ag1kg/accessibility/Anopheles-gambiae-PEST_CHROMOSOMES_AgamP3.accessible.fa /san/data/ag1kg/samples_pops.txt /san/data/ag1kg/outgroups/anc.meru_mela.3R.fa /nfs/kernlab_ISI/data/ag1kg/phaseIShicScan/summaryStats//UGS/3R.UGS.53000001.stats 53000001 54050000 1> /nfs/kernlab_ISI/data/ag1kg/phaseIShicScan/featureVectors//UGS/3R.UGS.53000001.fvec 2> /nfs/kernlab_ISI/data/ag1kg/phaseIShicScan/logsForFeatVecs//UGS/3R.UGS.53000001.fvec.log