Welcome to stdpopsim’s documentation!

Contents:

• Introduction
  • First steps
  • Getting involved
  • Citations
  • Licence and usage
• Installation
  • Requirements
  • Conda
  • Pip
  • Running the CLI
• Catalog
  • Arabidopsis thaliana
  • Canis familiaris
  • Drosophila melanogaster
  • Escherichia coli
  • Homo sapiens
  • Pongo abelii
  • Generic models
• Tutorials
  • Running stdpopsim with the command-line interface (CLI)
  • Running stdpopsim with the Python interface (API)
  • Example analyses with stdpopsim
• Command-line options
  • Positional Arguments
  • Named Arguments
  • msprime specific parameters
  • SLiM specific parameters
  • Sub-commands:
• API
  • Species definitions
  • Demographic Models
  • Generic models
  • Simulation Engines
• Development
  • Installation
  • GitHub workflow
  • Adding a new demographic model
  • Adding a new species
  • Adding a genetic map
  • Lifting over a genetic map
  • Coding standards
  • Naming conventions
  • Unit tests
  • Code Coverage
  • Documentation
• Changelogs
  • [0.1.2] - 2020-05-29
  • [0.1.1] - 2020-01-02
  • [0.1.0] - 2019-12-18

Indices and tables

• Index

• Module Index

• Search Page